recipe circlator

circlator: a tool to circularise genome assemblies

Homepage:

https://github.com/sanger-pathogens/circlator

License:

GPL / GNU General Public License v3 (GPLv3)

Recipe:

/circlator/meta.yaml

package circlator

Versions:

1.5.5-3,  1.5.5-2,  1.5.5-1,  1.5.5-0,  1.5.2-1,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.0-0, 

1.5.5-3,  1.5.5-2,  1.5.5-1,  1.5.5-0,  1.5.2-1,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.0-0,  1.3.1-0,  1.3.0-0,  1.1.2-0

Depends:

• amos >=3.1.0

• bio_assembly_refinement >=0.4.0

• bwa

• canu >=1.8

• mummer >=3.23

• openpyxl

• prodigal

• pyfastaq >=3.12.1

• pymummer >=0.9.0

• pysam >=0.8.1

• python >=3

• samtools

• spades

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install circlator

and update with:

conda update circlator

or use the docker container:

docker pull quay.io/biocontainers/circlator:<tag>

(see circlator/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/circlator/README.html)