recipe cistrome-ceas

Cistrome-CEAS – Cis-regulatory Element Annotation System

Homepage

https://bitbucket.org/cistrome/cistrome-applications-harvard/overview

Documentation

http://liulab.dfci.harvard.edu/CEAS/

Developer docs

https://bitbucket.org/cistrome/cistrome-applications-harvard

License

Artistic Licence

Recipe

/cistrome-ceas/meta.yaml

Tool to characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq of both sharp and broad binding factors

package cistrome-ceas

(downloads) docker_cistrome-ceas

Versions

1.0.2b1-1, 1.0.2b1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cistrome-ceas

and update with:

conda update cistrome-ceas

or use the docker container:

docker pull quay.io/biocontainers/cistrome-ceas:<tag>

(see cistrome-ceas/tags for valid values for <tag>)

Notes

Installs version 1.0.2 of CEAS from cistrome (commit id d8c0751, datestamp 20140929), which includes ceasBW (a version of ceas which can handle bigWig file input from MACS2). This version is also patched to suppress warnings about using sqlite3 rather than MySQLdb. The Cistrome code is at https://bitbucket.org/cistrome/cistrome-applications-harvard/overview The CEAS code is under the published-packages/CEAS/ subdirectory Cistrome data files and documentation can be found at http://liulab.dfci.harvard.edu/CEAS/index.html