recipe clever-toolkit

The CLEVER Toolkit

Homepage:

https://bitbucket.org/tobiasmarschall/clever-toolkit

License:

GPL3

Recipe:

/clever-toolkit/meta.yaml

CTK is a suite of tools to analyze next-generation sequencing data and, in particular, to discover and genotype insertions and deletions from paired-end reads.

package clever-toolkit

versions:

2.4-12,  2.4-11,  2.4-10,  2.4-9,  2.4-8,  2.4-7,  2.4-6,  2.4-5,  2.4-0, 

2.4-12,  2.4-11,  2.4-10,  2.4-9,  2.4-8,  2.4-7,  2.4-6,  2.4-5,  2.4-0,  2.3-0,  2.2.1-0,  2.1-3,  2.0rc4-3,  2.0rc4-2,  2.0rc3-1,  2.0rc3-0

depends bedtools:

depends bwa:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends matplotlib-base:

depends python:

3.*

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clever-toolkit

and update with::

   mamba update clever-toolkit

To create a new environment, run:

mamba create --name myenvname clever-toolkit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clever-toolkit:<tag>

(see `clever-toolkit/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clever-toolkit/README.html)