recipe clever-toolkit

The clever toolkit (CTK) is a suite of tools to analyze next-generation sequencing data and, in particular, to discover and genotype insertions and deletions from paired-end reads.

Homepage

https://bitbucket.org/tobiasmarschall/clever-toolkit

License

GPLv3

Recipe

/clever-toolkit/meta.yaml

package clever-toolkit

Versions

2.4-8,  2.4-7,  2.4-6,  2.4-5,  2.4-0,  2.3-0,  2.2.1-0,  2.1-3,  2.0rc4-3, 

2.4-8,  2.4-7,  2.4-6,  2.4-5,  2.4-0,  2.3-0,  2.2.1-0,  2.1-3,  2.0rc4-3,  2.0rc4-2,  2.0rc3-1,  2.0rc3-0

Depends

• bcftools >=1

• bedtools >=2.26

• boost-cpp >=1.70.0,<1.70.1.0a0

• bwa

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• make

• matplotlib 2.*

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools >=1

• zlib >=1.2.11,<1.3.0a0

Required By

• daisysuite

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install clever-toolkit

and update with:

conda update clever-toolkit

or use the docker container:

docker pull quay.io/biocontainers/clever-toolkit:<tag>

(see clever-toolkit/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clever-toolkit/README.html)