recipe clinod

Command line NoD (clinod), for predicting nucleolar localization sequences.

Homepage

http://www.compbio.dundee.ac.uk/nod

License

Apache License, Version 2.0 + others used internally

Recipe

/clinod/meta.yaml

package clinod

(downloads) docker_clinod

Versions

1.3-3,  1.3-2,  1.3-1,  1.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install clinod

and update with:

conda update clinod

or use the docker container:

docker pull quay.io/biocontainers/clinod:<tag>

(see clinod/tags for valid values for <tag>)

Notes

Command line NoD (clinod) is Java program which is packaged with a custom wrapper shell script. This shell wrapper is called "clinod" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "clinod -Xms512m -Xmx1g …"

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clinod/README.html)