recipe clipandmerge

Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together.

Homepage:

https://github.com/apeltzer/ClipAndMerge

License:

GPLv3

Recipe:

/clipandmerge/meta.yaml

package clipandmerge

(downloads) docker_clipandmerge

versions:

1.7.8-2,  1.7.8-1,  1.7.8-0

depends openjdk:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clipandmerge

and update with::

   mamba update clipandmerge

To create a new environment, run:

mamba create --name myenvname clipandmerge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clipandmerge:<tag>

(see `clipandmerge/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clipandmerge/README.html)