recipe clove

CLOVE: Classification of genomic fusions into structural variation events.

Homepage:https://github.com/PapenfussLab/clove
License:GPL-2.0
Recipe:/clove/meta.yaml
package clove

(downloads) docker_clove

Versions:

0.17-1, 0.17-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install clove

and update with:

conda update clove

or use the docker container:

docker pull quay.io/biocontainers/clove:<tag>

(see clove/tags for valid values for <tag>)

Notes

Clove is a Java program that comes with a custom wrapper shell script. This shell wrapper is called “clove” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “clove -Xms512m -Xmx1g”