recipe clumppling

Cluster matching and permutation program with integer linear programming.

Homepage:

https://pypi.org/project/clumppling

Documentation:

https://github.com/PopGenClustering/Clumppling/blob/master/Clumppling_Manual.pdf

Developer docs:

https://github.com/PopGenClustering/Clumppling

License:

MIT / MIT

Recipe:

/clumppling/meta.yaml

Clumppling (CLUster Matching and Permutation Program that uses integer Linear programmING) is a framework for aligning clustering results of population structure analysis.

package clumppling

(downloads) docker_clumppling

versions:

0.3.2-0

depends cvxpy:

1.3.1.*

depends matplotlib-base:

>=3.7.0,<4.0.0

depends networkx:

<3.0

depends numpy:

1.24.0.*

depends pandas:

>=2.0.0,<3.0.0

depends python:

>=3.8,<3.12

depends python-louvain:

0.16.*

depends scipy:

1.10.0.*

depends tracywidom:

0.3.0.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clumppling

and update with::

   mamba update clumppling

To create a new environment, run:

mamba create --name myenvname clumppling

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clumppling:<tag>

(see `clumppling/tags`_ for valid values for ``<tag>``)

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