recipe clusterone

Graph clustering algorithm

Homepage:

https://paccanarolab.org/cluster-one/

License:

GPL-3.0

Recipe:

/clusterone/meta.yaml

Links:

doi: 10.1038/nmeth.1938

ClusterONE is a graph clustering algorithm that is able to handle weighted graphs and readily generates overlapping clusters

package clusterone

(downloads) docker_clusterone

versions:

1.0-0

depends openjdk:

>=8

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clusterone

and update with::

   mamba update clusterone

To create a new environment, run:

mamba create --name myenvname clusterone

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/clusterone:<tag>

(see `clusterone/tags`_ for valid values for ``<tag>``)

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Link to this page

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