recipe cmseq

Set of utilities on sequences and BAM files

Homepage:

https://github.com/SegataLab/cmseq

License:

MIT License

Recipe:

/cmseq/meta.yaml

package cmseq

Versions:

1.0.4-0,  1.0.2-0,  1.0-0

Depends:

• bcbio-gff

• biopython

• numpy

• pandas

• pysam

• python >=3

• samtools >=1.0

• scipy

Required By:

• metamlst

• metaclock

• metaphlan

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cmseq

and update with:

conda update cmseq

or use the docker container:

docker pull quay.io/biocontainers/cmseq:<tag>

(see cmseq/tags for valid values for <tag>)

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Link to this page

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