recipe cnv_facets

Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data

Homepage:

https://github.com/dariober/cnv_facets

License:

MIT / MIT

Recipe:

/cnv_facets/meta.yaml

package cnv_facets

Versions:

0.16.0-1,  0.16.0-0,  0.15.0-1,  0.15.0-0,  0.14.0-1,  0.13.0-1,  0.12.1-1,  0.12.1-0,  0.12.0-0, 

0.16.0-1,  0.16.0-0,  0.15.0-1,  0.15.0-0,  0.14.0-1,  0.13.0-1,  0.12.1-1,  0.12.1-0,  0.12.0-0,  v0.11.3-2,  v0.11.3-1,  v0.11.2-1

Depends:

• bcftools >=1.9

• bioconductor-rsamtools

• htslib >=1.9,<1.10.0a0

• libgcc-ng >=7.3.0

• libgfortran-ng >=7,<8.0a0

• libstdcxx-ng >=7.3.0

• python >=3.8,<3.9.0a0

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-ggplot2

• r-gridextra

• r-jsonlite

• samtools

• snp-pileup

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cnv_facets

and update with:

conda update cnv_facets

or use the docker container:

docker pull quay.io/biocontainers/cnv_facets:<tag>

(see cnv_facets/tags for valid values for <tag>)

Download stats

Link to this page

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