cnvkit

downloads

Copy number variant detection from targeted DNA sequencing

Home https://github.com/etal/cnvkit
Versions 0.7.10, 0.7.11, 0.7.3, 0.7.4, 0.7.5, 0.7.6, 0.7.7, 0.7.8, 0.7.9, 0.8.0, 0.8.1, 0.8.2, 0.8.3a0, 0.8.4, 0.8.5dev0
License Apache License 2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cnvkit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cnvkit

and update with:

conda update cnvkit

docker

A Docker container is available at https://quay.io/repository/biocontainers/cnvkit.