recipe coconet-binning

A contig binning tool from viral metagenomes

Homepage:

https://github.com/Puumanamana/CoCoNet

Documentation:

https://coconet.readthedocs.io/en/latest/

License:

APACHE / Apache 2.0

Recipe:

/coconet-binning/meta.yaml

package coconet-binning

versions:

1.1.0-0,  1.0.0-0,  0.54-0,  0.52-0

depends biopython:

depends h5py:

depends hnswlib:

depends numpy:

depends pandas:

>=1.0

depends psutil:

depends pybind11:

depends pysam:

>=0.16

depends python:

3.7.*

depends python-igraph:

>=0.8

depends pytorch:

>=1.0

depends pyyaml:

depends scikit-bio:

>=0.5.6

depends scikit-learn:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install coconet-binning

and update with::

   mamba update coconet-binning

To create a new environment, run:

mamba create --name myenvname coconet-binning

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/coconet-binning:<tag>

(see `coconet-binning/tags`_ for valid values for ``<tag>``)

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