recipe comparative-annotation-toolkit

A straightforward end-to-end pipeline that takes as input a HAL-format multiple whole genome alignment as well as a GFF3 file representing annotations on one high quality assembly in the HAL alignment, and produces a output GFF3 annotation on all target genomes chosen

Homepage

https://github.com/ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit

License

APACHE / Apache 2.0

Recipe

/comparative-annotation-toolkit/meta.yaml

Links

doi: 10.1101/231118

package comparative-annotation-toolkit

(downloads) docker_comparative-annotation-toolkit

Versions

0.1-2, 0.1-1, 0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install comparative-annotation-toolkit

and update with:

conda update comparative-annotation-toolkit

or use the docker container:

docker pull quay.io/biocontainers/comparative-annotation-toolkit:<tag>

(see comparative-annotation-toolkit/tags for valid values for <tag>)