recipe confindr

Detect intra- and inter-species bacterial contamination in NGS reads

Homepage

https://github.com/OLC-Bioinformatics/ConFindr

Documentation

https://OLC-Bioinformatics.github.io/ConFindr/

License

MIT / MIT

Recipe

/confindr/meta.yaml

package confindr

(downloads) docker_confindr

Versions

0.7.0-0, 0.6.0-0, 0.5.1-0, 0.5.0-0, 0.4.8-0, 0.4.7-0, 0.4.6-0, 0.4.5-0, 0.4.4-0, 0.4.3-0, 0.4.2-0, 0.4.1-0, 0.4.0-0, 0.3.4-0, 0.3.3-0, 0.3.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install confindr

and update with:

conda update confindr

or use the docker container:

docker pull quay.io/biocontainers/confindr:<tag>

(see confindr/tags for valid values for <tag>)