recipe control-freec

Copy number and genotype annotation from whole genome and whole exome sequencing data.

Homepage:

https://github.com/BoevaLab/FREEC

License:

GPL (>=2)

Recipe:

/control-freec/meta.yaml

Links:

biotools: freec

package control-freec

Versions:

11.6-2,  11.6-1,  11.6-0,  11.5-1,  11.5-0,  11.4-0,  10.6-0,  10.5-0

Depends:

• bioconductor-rtracklayer

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• perl

• r-base

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install control-freec

and update with:

conda update control-freec

or use the docker container:

docker pull quay.io/biocontainers/control-freec:<tag>

(see control-freec/tags for valid values for <tag>)

Notes

The tool will be available as `freec` in the command line. See the homepage for example config files. Auxiliary scripts like e.g. freec2bed.pl and freec2circos.pl (see homepage) are available in the command line as well.

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