recipe coprarna

Target prediction for prokaryotic trans-acting small RNAs

Homepage

https://github.com/PatrickRWright/CopraRNA

License

MIT

Recipe

/coprarna/meta.yaml

package coprarna

(downloads) docker_coprarna

Versions

2.1.3-5, 2.1.3-4, 2.1.3-3, 2.1.3-2, 2.1.3-1, 2.1.3-0, 2.1.2-0, 2.1.1-0, 2.1.0-0

Depends blast-legacy

2.2.22

Depends bzip2

Depends clustalo

Depends coreutils

8.25

Depends domclust

Depends embassy-phylip

3.69.650

Depends emboss

6.5.7

Depends gawk

Depends grep

Depends intarna

2.3.1

Depends mafft

7.310

Depends perl

>=5.22

Depends perl-bio-eutilities

1.75

Depends perl-bioperl

1.6.924

Depends perl-getopt-long

Depends perl-list-moreutils

0.428

Depends perl-parallel-forkmanager

1.17

Depends phantomjs

Depends python

Depends r-base

3.4.1

Depends r-pheatmap

Depends r-robustrankaggreg

Depends r-seqinr

Depends sed

Depends suds-jurko

0.6

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install coprarna

and update with:

conda update coprarna

or use the docker container:

docker pull quay.io/biocontainers/coprarna:<tag>

(see coprarna/tags for valid values for <tag>)