recipe count_constant_sites

Compute the count of cases in constant sites in a (FASTA) multiple sequence alignment

Homepage

https://github.com/pvanheus/count_constant_sites

License

MIT

Recipe

/count_constant_sites/meta.yaml

Given a FASTA file with a multiple sequence alignment of nucleotides, this tool counts the sites in the alignment that are constant. The output is a line suitable for use in IQTREE's `-fconst`, thus 4 numbers with commas expressing the count of As, Cs, Gs and Ts.

package count_constant_sites

(downloads) docker_count_constant_sites

Versions

0.1.1-0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install count_constant_sites

and update with:

conda update count_constant_sites

or use the docker container:

docker pull quay.io/biocontainers/count_constant_sites:<tag>

(see count_constant_sites/tags for valid values for <tag>)