recipe coverm

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications

Homepage

https://github.com/wwood/CoverM

License

GPL3

Recipe

/coverm/meta.yaml

package coverm

Versions

0.6.1-4,  0.6.1-3,  0.6.1-2,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.0-2,  0.4.0-1, 

0.6.1-4,  0.6.1-3,  0.6.1-2,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.0-2,  0.4.0-1,  0.4.0-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.0.alpha7-0

Depends

• bwa >=0.7.17

• dashing >=0.4.0

• fastani >=1.31

• gsl >=2.7,<2.8.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• minimap2 2.17.*

• openblas

• samtools >=1.9

• starcode

• zlib >=1.2.11,<1.3.0a0

Required By

• magpurify

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install coverm

and update with:

conda update coverm

or use the docker container:

docker pull quay.io/biocontainers/coverm:<tag>

(see coverm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/coverm/README.html)