recipe coverm

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications

Homepage:

https://github.com/wwood/CoverM

License:

GPL3

Recipe:

/coverm/meta.yaml

package coverm

Versions:

0.6.1-5,  0.6.1-4,  0.6.1-3,  0.6.1-2,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.0-2, 

0.6.1-5,  0.6.1-4,  0.6.1-3,  0.6.1-2,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.0-2,  0.4.0-1,  0.4.0-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.0.alpha7-0

Depends:

• bwa >=0.7.17

• dashing >=0.4.0

• fastani >=1.31

• gsl >=2.7,<2.8.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• minimap2 >=2.24

• openblas

• samtools >=1.9

• starcode

• zlib >=1.2.12,<1.3.0a0

Required By:

• magpurify

• quantpi

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install coverm

and update with:

conda update coverm

or use the docker container:

docker pull quay.io/biocontainers/coverm:<tag>

(see coverm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/coverm/README.html)