recipe covtobed

covtobed - generate a BED file of covered regions from a BAM file

Homepage

https://github.com/telatin/covtobed/

License

MIT

Recipe

/covtobed/meta.yaml

package covtobed

Versions

1.1.2-0,  1.1.0-0,  1.0.1-0,  1.0.0-0,  0.6-0,  0.4-0,  0.3-0,  0.1-0

Depends

• bamtools >=2.5.1,<2.5.2.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install covtobed

and update with:

conda update covtobed

or use the docker container:

docker pull quay.io/biocontainers/covtobed:<tag>

(see covtobed/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/covtobed/README.html)