recipe crabs

Crabs (Creating Reference databases for Amplicon-Based Sequencing) is a program to download and curate reference databases for eDNA metabarcoding analyses

Homepage:

https://github.com/gjeunen/reference_database_creator

License:

MIT License

Recipe:

/crabs/meta.yaml

package crabs

Versions:

0.1.1-0

Depends:

• argparse

• biopython 1.78.*

• cutadapt >=3.4

• matplotlib-base

• muscle >=3.8.31

• numpy

• pandas >=0.23.4

• python >=3.6.10

• tqdm

• vsearch >=2.13.3

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install crabs

and update with:

conda update crabs

or use the docker container:

docker pull quay.io/biocontainers/crabs:<tag>

(see crabs/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crabs/README.html)