- recipe cressent
A comprehensive toolkit for ssDNA virus analysis
- Homepage:
- License:
MIT / MIT
- Recipe:
cressent is a tool for analyzing ssDNA viruses, providing modules for sequence alignment, phylogenetic analysis, motif discovery, visualization and more.
- package cressent¶
- versions:
1.0.0-0- depends bioconductor-biostrings:
>=2.74.0- depends bioconductor-decipher:
>=3.2.0- depends bioconductor-ggtree:
>=3.14.0- depends bioconductor-ggtreeextra:
>=1.16.0- depends bioconductor-treeio:
>=1.30.0- depends biopython:
>=1.85- depends blast:
>=2.16.0- depends cd-hit:
>=4.5- depends click:
- depends diamond:
>=2.0- depends gffutils:
0.13.*- depends iqtree:
>=2.3.6- depends mafft:
>=7.0- depends matplotlib-base:
>=3.10.0- depends mcl:
>=22.0- depends meme:
>=5.5- depends numpy:
>=1.21.0- depends pandas:
>=2.2- depends pytest:
>=8.3- depends python:
>=3.6- depends r-ape:
>=5.5- depends r-base:
>=4.0- depends r-dendextend:
>=1.19.0- depends r-dplyr:
>=1.1.4- depends r-gggenes:
>=0.5- depends r-ggplot2:
>=3.5- depends r-ggseqlogo:
>=0.2- depends r-rcolorbrewer:
>=1.1.3- depends r-rlang:
>=1.1.4- depends r-tidyr:
>=1.3.1- depends r-tidytree:
>=0.4.6- depends scipy:
>=1.15.2- depends seaborn:
>=0.13.2- depends seqkit:
>=2.9.0- depends trimal:
>=1.5.0- depends viennarna:
- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install cressent and update with:: mamba update cressent
To create a new environment, run:
mamba create --name myenvname cressent
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/cressent:<tag> (see `cressent/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/cressent/README.html)
