recipe crispresso

A software pipeline for the analysis of targeted CRISPR-Cas9 sequencing data

Homepage

https://github.com/lucapinello/CRISPResso

License

GPLv3

Recipe

/crispresso/meta.yaml

package crispresso

Versions

1.0.13-5,  1.0.13-4,  1.0.13-3,  1.0.13-2,  1.0.13-1,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0-0

Depends

• argparse

• biopython >=1.6.5

• bowtie2

• emboss

• flash

• libgcc-ng >=10.3.0

• matplotlib >=1.3.1

• mock

• nose

• numpy >=1.10.4

• openjdk >=8

• pandas >=0.16

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools

• seaborn

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso

and update with:

conda update crispresso

or use the docker container:

docker pull quay.io/biocontainers/crispresso:<tag>

(see crispresso/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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