recipe crispresso

A software pipeline for the analysis of targeted CRISPR-Cas9 sequencing data

Homepage

https://github.com/lucapinello/CRISPResso

License

GPLv3

Recipe

/crispresso/meta.yaml

package crispresso

Versions

1.0.13-1, 1.0.8-0, 1.0.7-0, 1.0.6-0, 1.0-0

Depends

• argparse

• biopython >=1.6.5

• bowtie2

• emboss

• flash

• libgcc-ng >=4.9

• matplotlib >=1.3.1

• mock

• nose

• numpy >=1.10.4

• openjdk >=8

• pandas >=0.16

• python >=2.7,<2.8.0a0

• samtools

• seaborn

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso

and update with:

conda update crispresso

or use the docker container:

docker pull quay.io/biocontainers/crispresso:<tag>

(see crispresso/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crispresso/README.html)