recipe crisprhawk

CRISPR-HAWK: Haplotype and vAriant-aWare guide design toolKit

Homepage:

https://github.com/pinellolab/CRISPR-HAWK

License:

AGPL-3.0-or-later AND BSD-3-Clause

Recipe:

/crisprhawk/meta.yaml

package crisprhawk

(downloads) docker_crisprhawk

versions:

0.1.2-0

depends biopython:

1.83.*

depends charset-normalizer:

3.3.2.*

depends colorama:

0.4.6.*

depends contourpy:

1.1.1.*

depends cycler:

0.12.1.*

depends exceptiongroup:

1.2.2.*

depends filelock:

3.16.1.*

depends fonttools:

4.53.1.*

depends fsspec:

2024.10.0.*

depends gmpy2:

2.1.5.*

depends h5py:

3.7.0.*

depends idna:

3.10.*

depends iniconfig:

2.0.0.*

depends jinja2:

3.1.4.*

depends joblib:

1.4.2.*

depends kiwisolver:

1.4.5.*

depends lightgbm:

3.3.5.*

depends markupsafe:

2.1.5.*

depends matplotlib-base:

3.5.3.*

depends mpmath:

1.3.0.*

depends munkres:

1.1.4.*

depends networkx:

3.1.*

depends numexpr:

2.8.3.*

depends numpy:

1.24.4.*

depends openpyxl:

3.1.5.*

depends packaging:

25.0.*

depends pandas:

1.4.4.*

depends pillow:

10.4.0.*

depends pluggy:

1.5.0.*

depends pyarrow:

17.0.0.*

depends pybedtools:

0.10.0.*

depends pysam:

0.22.1.*

depends pytables:

3.7.0.*

depends pytest:

8.3.4.*

depends python:

>=3.8,<3.9

depends pytorch:

2.3.0.*

depends requests:

2.32.3.*

depends rs3:

0.0.16.*

depends scikit-learn:

1.1.1.*

depends scipy:

1.9.1.*

depends seaborn:

0.13.2.*

depends six:

1.16.0.*

depends sympy:

1.13.3.*

depends threadpoolctl:

3.5.0.*

depends tornado:

6.4.1.*

depends tqdm:

4.67.1.*

depends typing_extensions:

4.12.2.*

depends unicodedata2:

15.1.0.*

depends urllib3:

2.2.3.*

depends xlrd:

2.0.1.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crisprhawk

and update with::

   mamba update crisprhawk

To create a new environment, run:

mamba create --name myenvname crisprhawk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/crisprhawk:<tag>

(see `crisprhawk/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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