recipe cromwell-tools

Utilities for interacting with the Cromwell workflow engine

Homepage:

http://github.com/broadinstitute/cromwell-tools

Documentation:

https://cromwell-tools.readthedocs.io/en/stable/

License:

BSD / BSD

Recipe:

/cromwell-tools/meta.yaml

package cromwell-tools

versions:

2.4.1-0,  2.4.0-0,  2.3.0-0,  2.2.3-0,  2.2.0-0,  1.1.0-0,  1.0.1-0

depends google-api-python-client:

1.7.11.*

depends google-auth:

>=1.6.1,<2

depends python:

>=3.6

depends python-dateutil:

2.8.0.*

depends requests:

>=2.20.0,<3

depends setuptools_scm:

>=3.1.0,<4

depends six:

>=1.11.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cromwell-tools

and update with::

   mamba update cromwell-tools

To create a new environment, run:

mamba create --name myenvname cromwell-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cromwell-tools:<tag>

(see `cromwell-tools/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cromwell-tools/README.html)