recipe crossmap

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies.

Homepage

http://crossmap.sourceforge.net

License

GPL / GPLv2

Recipe

/crossmap/meta.yaml

package crossmap

(downloads) docker_crossmap

Versions

0.3.4-0, 0.3.3-0, 0.3.2-0, 0.3.1-0, 0.2.8-0, 0.2.7-2, 0.2.7-1, 0.2.7-0, 0.2.5-1, 0.2.5-0, 0.2.2-3, 0.2.2-2, 0.2.2-1, 0.2.2-0, 0.2.1-1, 0.2.1-0

Depends bx-python

Depends cython

>=0.17

Depends numpy

Depends openssl

>=1.0.2r,<1.0.3a

Depends pybigwig

Depends pysam

>=0.11.1,<0.14.0

Depends python

>=3

Depends ucsc-wigtobigwig

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crossmap

and update with:

conda update crossmap

or use the docker container:

docker pull quay.io/biocontainers/crossmap:<tag>

(see crossmap/tags for valid values for <tag>)