recipe crossmap

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies.

Homepage:

http://crossmap.sourceforge.net

License:

GPL / GPL-3.0-or-later

Recipe:

/crossmap/meta.yaml

Links:

usegalaxy-eu: crossmap_bam, usegalaxy-eu: crossmap_bed, usegalaxy-eu: crossmap_vcf, usegalaxy-eu: crossmap_wig, usegalaxy-eu: crossmap_gff

package crossmap

Versions:

0.6.5-0,  0.6.4-0,  0.6.3-0,  0.6.1-0,  0.6.0-0,  0.5.2-0,  0.4.2-0,  0.4.1-0,  0.3.9-0, 

0.6.5-0,  0.6.4-0,  0.6.3-0,  0.6.1-0,  0.6.0-0,  0.5.2-0,  0.4.2-0,  0.4.1-0,  0.3.9-0,  0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-0,  0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.2.8-0,  0.2.7-2,  0.2.7-1,  0.2.7-0,  0.2.5-1,  0.2.5-0,  0.2.2-3,  0.2.2-2,  0.2.2-1,  0.2.2-0,  0.2.1-1,  0.2.1-0

Depends:

• bx-python

• cython >=0.17

• numpy

• pybigwig

• pysam >=0.15

• python >=3

• ucsc-wigtobigwig

Required By:

• hubward-all

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install crossmap

and update with:

conda update crossmap

or use the docker container:

docker pull quay.io/biocontainers/crossmap:<tag>

(see crossmap/tags for valid values for <tag>)

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Link to this page

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