recipe csubst

Tool for analyzing combinatorial codon substitutions in DNA sequences.

Homepage:

https://github.com/kfuku52/csubst

License:

BSD-3-Clause

Recipe:

/csubst/meta.yaml

package csubst

versions:

1.4.0-1,  1.4.0-0

depends biopython:

depends ete3:

depends iqtree:

>=2.0.0

depends joblib:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends mafft:

depends matplotlib-base:

depends numpy:

>=1.22.4,<2.0a0

depends pandas:

depends pymol-open-source:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends pyvolve:

depends scipy:

depends threadpoolctl:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install csubst

and update with::

   mamba update csubst

To create a new environment, run:

mamba create --name myenvname csubst

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/csubst:<tag>

(see `csubst/tags`_ for valid values for ``<tag>``)

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