cutadapt

downloads

trim adapters from high-throughput sequencing reads

Home https://cutadapt.readthedocs.io/
Versions 1.10, 1.11, 1.12, 1.13, 1.14, 1.8.1, 1.8.3, 1.9.1
License MIT License
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cutadapt

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cutadapt

and update with:

conda update cutadapt

docker

A Docker container is available at https://quay.io/repository/biocontainers/cutadapt.