- recipe czlab_perl_lib
mCross Perl script
czlab_per_lib is the core CLI and perl library used in mCross, which is a bioinformatic tool to identify RNA-protein cross-link sites. See details of the methods in Feng et al. (2019), Modeling the in vivo specificity of RNA-binding proteins by precisely registering protein-RNA crosslink sites. Mol Cell. 74:1189-1204.E6.
- package czlab_perl_lib¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install czlab_perl_lib and update with:: mamba update czlab_perl_lib
To create a new environment, run:
mamba create --name myenvname czlab_perl_lib
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/czlab_perl_lib:<tag> (see `czlab_perl_lib/tags`_ for valid values for ``<tag>``)