recipe dadaist2

Command line wrapper to run DADA2 on a set of paired-end reads

Homepage

https://github.com/quadram-institute-bioscience/dadaist2

License

MIT

Recipe

/dadaist2/meta.yaml

Command line wrapper to run DADA2 on a set of paired-end reads

package dadaist2

Versions

0.4.00-1,  0.4.00-0,  0.2.00-0,  0.1.04-0

Depends

• bioconductor-dada2

• bioconductor-microbiome

• bioconductor-phyloseq

• clustalo

• fastp

• fasttree

• perl

• perl-fastx-reader >=0.90

• vsearch

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dadaist2

and update with:

conda update dadaist2

or use the docker container:

docker pull quay.io/biocontainers/dadaist2:<tag>

(see dadaist2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dadaist2/README.html)