recipe dadaist2

Command line wrapper to run DADA2 on a set of paired-end reads

Homepage

https://quadram-institute-bioscience.github.io/dadaist2

Developer docs

https://github.com/quadram-institute-bioscience/dadaist2

License

MIT

Recipe

/dadaist2/meta.yaml

Links

biotools: dadaist2, doi: 10.3390/ijms22105309

Command line wrapper to run DADA2 on a set of paired-end reads with several exporting tools to generate plots and numerical ecology analyses

package dadaist2

Versions

1.2.1-0,  1.2.0-1,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.1-0, 

1.2.1-0,  1.2.0-1,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.1-0,  0.9.0-0,  0.8.0-0,  0.7.7-1,  0.7.7-0,  0.7.5-0,  0.7.3-2,  0.7.3-1,  0.7.3-0,  0.6.0-1,  0.6.0-0,  0.4.00-2,  0.4.00-1,  0.4.00-0,  0.2.00-0,  0.1.04-0

Depends

• bioconductor-dada2 >=1.18.0

• bioconductor-decipher

• bioconductor-microbiome

• bioconductor-phyloseq

• biom-format 2.1.10.*

• clustalo

• cutadapt >=3.4

• fastp

• fasttree

• pandas >=1.0

• perl

• perl-fastx-reader >=0.90

• python >=3.6

• qax

• r-matrix 1.3-2.*

• rich

• seqfu

Required By

• dadaist2-full

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dadaist2

and update with:

conda update dadaist2

or use the docker container:

docker pull quay.io/biocontainers/dadaist2:<tag>

(see dadaist2/tags for valid values for <tag>)

Download stats

Link to this page

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