recipe daisysuite

DaisySuite - mapping-based pipeline for horizontal gene transfer (HGT) detection using sequencing data

Homepage

https://gitlab.com/eseiler/DaisySuite

License

GNU GPLv3

Recipe

/daisysuite/meta.yaml

package daisysuite

Versions

1.3.0-1,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.2.0-1,  1.2.0-0,  1.1.0-0,  1.0.0-0

Depends

• bedtools 2.22

• biopython 1.72

• bwa 0.7.12

• clever-toolkit 2.0rc3

• gustaf 1.0.8

• mason 2.0.7

• pandas 0.18.1

• pysam 0.9.1.4

• sak 0.4.6

• samtools 1.9

• scipy 1.1.0

• snakemake 3.9.0

• stellar 1.4.9

• yara 0.9.6

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install daisysuite

and update with:

conda update daisysuite

or use the docker container:

docker pull quay.io/biocontainers/daisysuite:<tag>

(see daisysuite/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/daisysuite/README.html)