recipe danbing-tk

Toolkit for VNTR genotyping and repeat-pan genome graph construction

Homepage:

https://github.com/ChaissonLab/danbing-tk

License:

BSD-3-Clause

Recipe:

/danbing-tk/meta.yaml

Links:

doi: 10.1038/s41467-021-24378-0

package danbing-tk

versions:

1.3.2.5-0

depends eigen:

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install danbing-tk

and update with::

   mamba update danbing-tk

To create a new environment, run:

mamba create --name myenvname danbing-tk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/danbing-tk:<tag>

(see `danbing-tk/tags`_ for valid values for ``<tag>``)

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