recipe datma

DistributedAuTomaticMetagenomicAssembly andAnnotation framework

Homepage:

https://github.com/andvides/DATMA

License:

GPL / GPL-3.0

Recipe:

/datma/meta.yaml

package datma

Versions:

2.0-0,  1.0-0

Depends:

• blast

• bwa

• checkm-genome

• clame 1.*

• flash2

• kaiju

• krona

• matplotlib-base

• megahit

• mergenotcombined

• numpy

• prodigal

• python

• quast

• rapifilt

• rdp_classifier

• samtools

• sdsl-lite

• selectfasta

• spades

• trimmomatic

• velvet

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install datma

and update with:

conda update datma

or use the docker container:

docker pull quay.io/biocontainers/datma:<tag>

(see datma/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/datma/README.html)