recipe datma

DistributedAuTomaticMetagenomicAssembly andAnnotation framework

Homepage

https://github.com/andvides/DATMA

License

GPL / GPL-3.0

Recipe

/datma/meta.yaml

package datma

Versions

1.0-0

Depends

• blast 2.6.0.*

• bowtie2 2.3.5.*

• busco 2.0.1.*

• bwa 0.7.17.*

• checkm-genome 1.0.12.*

• clame 1.0 he1b5a44_1

• fastqc 0.11.8.*

• fastx_toolkit

• flash2

• gmp

• kaiju

• kraken 1.1.*

• krona 2.7.*

• matplotlib-base

• maven

• megahit 1.1.3.*

• mergenotcombined

• openjdk

• pplacer 1.1.alpha19.*

• prinseq

• prodigal

• python >=2.7,<=3.6.5

• quast 5.0.2.*

• rapifilt

• rdp_classifier

• samtools 1.9.*

• selectfasta

• spades 3.13.0.*

• trimmomatic

• unmerge

• velvet

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install datma

and update with:

conda update datma

or use the docker container:

docker pull quay.io/biocontainers/datma:<tag>

(see datma/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/datma/README.html)