recipe dca

Count autoencoder for scRNA-seq denoising

Homepage

https://github.com/theislab/dca

License

APACHE / Apache Software

Recipe

/dca/meta.yaml

Links

doi: 10.1101/300681

package dca

(downloads) docker_dca

Versions

0.2.2-1, 0.2.2-0

Depends h5py

Depends keras

>=2.0.8

Depends kopt

Depends numpy

>=1.7

Depends pandas

Depends python

>=3.6

Depends scanpy

Depends scikit-learn

Depends six

>=1.10.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dca

and update with:

conda update dca

or use the docker container:

docker pull quay.io/biocontainers/dca:<tag>

(see dca/tags for valid values for <tag>)