recipe ddprimer

Pipeline for designing primers optimized for droplet digital PCR

Homepage:

https://github.com/globuzzz2000/ddPrimer

License:

MIT

Recipe:

/ddprimer/meta.yaml

package ddprimer

versions:

0.1.1-0

depends bcftools:

depends biopython:

>=1.78

depends blast:

depends colorama:

>=0.4.4

depends htslib:

depends numpy:

>=1.20

depends openpyxl:

>=3.0.5

depends pandas:

>=1.3

depends primer3-py:

>=2.0.0

depends python:

>=3.10

depends samtools:

depends tqdm:

>=4.60.0

depends viennarna:

>=2.7.0

depends wxpython:

>=4.1.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ddprimer

and update with::

   mamba update ddprimer

To create a new environment, run:

mamba create --name myenvname ddprimer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ddprimer:<tag>

(see `ddprimer/tags`_ for valid values for ``<tag>``)

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