recipe debreak

DeBreak, Deciphering the exact breakpoints of structural variations using long sequencing reads

Homepage:

https://github.com/ChongLab/DeBreak

License:

MIT / MIT

Recipe:

/debreak/meta.yaml

package debreak

Versions:

1.3-0,  1.0.2-0

Depends:

• minimap2 2.15.*

• pysam 0.19.0.*

• python >=3

• samtools 1.9.*

• wtdbg 2.5.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install debreak

and update with:

conda update debreak

or use the docker container:

docker pull quay.io/biocontainers/debreak:<tag>

(see debreak/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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