recipe debwt

A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome. DeBWT has good scalability to construct BWT in parallel computing. It is well-suited to run on multiple core servers or clusters to construct the BWT of large collections of genome sequences.

Homepage

https://github.com/DixianZhu/deBWT

License

Unknown

Recipe

/debwt/meta.yaml

package debwt

(downloads) docker_debwt

Versions

1.0.1-2, 1.0.1-1, 1.0.1-0

Depends libgcc-ng

>=4.9

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install debwt

and update with:

conda update debwt

or use the docker container:

docker pull quay.io/biocontainers/debwt:<tag>

(see debwt/tags for valid values for <tag>)