recipe dedup

DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments).

Homepage

https://github.com/apeltzer/dedup

License

GPLv3

Recipe

/dedup/meta.yaml

package dedup

(downloads) docker_dedup

Versions

0.12.5-1, 0.12.4-1, 0.12.3-1, 0.12.3-0

Depends openjdk

Depends python

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dedup

and update with:

conda update dedup

or use the docker container:

docker pull quay.io/biocontainers/dedup:<tag>

(see dedup/tags for valid values for <tag>)