recipe deepbgc

DeepBGC - Biosynthetic Gene Cluster detection and classification

Homepage

https://github.com/Merck/DeepBGC

License

MIT / MIT

Recipe

/deepbgc/meta.yaml

package deepbgc

Versions

0.1.18-0,  0.1.17-0,  0.1.16-0,  0.1.15-0,  0.1.14-0,  0.1.13-0,  0.1.10-0,  0.1.9-0,  0.1.8-0, 

0.1.18-0,  0.1.17-0,  0.1.16-0,  0.1.15-0,  0.1.14-0,  0.1.13-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-1,  0.1.3-0

Depends

• appdirs >=1.4.3

• biopython >=1.70

• hmmer >=3.1b2

• keras >=2.2.4,<2.3.0

• matplotlib-base >=2.2.3

• numpy >=1.16.1

• pandas >=0.24.1

• prodigal

• python >=3.5

• scikit-learn >=0.18.2

• tensorflow >=1.12.0,<2.0.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install deepbgc

and update with:

conda update deepbgc

or use the docker container:

docker pull quay.io/biocontainers/deepbgc:<tag>

(see deepbgc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deepbgc/README.html)