- recipe deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data
- Homepage:
- License:
MIT
- Recipe:
- package deepvariant¶
-
- Versions:
1.4.0-0
,1.3.0-0
,1.2.0-0
,1.1.0-2
,1.1.0-1
,1.1.0-0
,1.0.0-3
,1.0.0-2
,1.0.0-1
,1.4.0-0
,1.3.0-0
,1.2.0-0
,1.1.0-2
,1.1.0-1
,1.1.0-0
,1.0.0-3
,1.0.0-2
,1.0.0-1
,1.0.0-0
,0.10.0-4
,0.10.0-3
,0.10.0-2
,0.10.0-1
,0.10.0-0
,0.9.0-0
,0.8.0-0
,0.7.2-1
,0.7.2-0
,0.7.1-0
,0.7.0-0
,0.6.1-3
,0.6.1-2
,0.6.1-0
,0.6.0-0
,0.4.1-1
,0.4.1-0
- Depends:
curl
>=7.83.1,<8.0a0
libzlib
>=1.2.12,<1.3.0a0
numpy
1.16.*
openjdk
>=8,<9
python
>=3.6,<3.7.0a0
python_abi
3.6.* *_cp36m
tensorflow-estimator
2.0.*
tensorflow-gpu
2.0.*
zlib
>=1.2.12,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install deepvariant
and update with:
conda update deepvariant
or use the docker container:
docker pull quay.io/biocontainers/deepvariant:<tag>
(see deepvariant/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/deepvariant/README.html)