recipe deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data

Homepage

https://github.com/google/deepvariant

License

MIT

Recipe

/deepvariant/meta.yaml

package deepvariant

Versions

0.10.0-4,  0.10.0-3,  0.10.0-2,  0.10.0-1,  0.10.0-0,  0.9.0-0,  0.8.0-0,  0.7.2-1,  0.7.2-0, 

0.10.0-4,  0.10.0-3,  0.10.0-2,  0.10.0-1,  0.10.0-0,  0.9.0-0,  0.8.0-0,  0.7.2-1,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-3,  0.6.1-2,  0.6.1-0,  0.6.0-0,  0.4.1-1,  0.4.1-0

Depends

• absl-py

• altair

• boost

• contextlib2

• crcmod

• curl >=7.71.1,<8.0a0

• enum34

• google-cloud-sdk

• htslib

• intervaltree

• mock

• numpy 1.16.*

• oauth2client

• openjdk >=8,<9

• parallel

• protobuf

• psutil

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• requests

• scipy

• six

• tensorflow 2.0.*

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install deepvariant

and update with:

conda update deepvariant

or use the docker container:

docker pull quay.io/biocontainers/deepvariant:<tag>

(see deepvariant/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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