recipe deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data

Homepage:

https://github.com/google/deepvariant

License:

MIT

Recipe:

/deepvariant/meta.yaml

package deepvariant

Versions:

1.4.0-0,  1.3.0-0,  1.2.0-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-3,  1.0.0-2,  1.0.0-1, 

1.4.0-0,  1.3.0-0,  1.2.0-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0,  0.10.0-4,  0.10.0-3,  0.10.0-2,  0.10.0-1,  0.10.0-0,  0.9.0-0,  0.8.0-0,  0.7.2-1,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-3,  0.6.1-2,  0.6.1-0,  0.6.0-0,  0.4.1-1,  0.4.1-0

Depends:

• absl-py

• altair

• boost

• contextlib2

• crcmod

• curl >=7.83.1,<8.0a0

• enum34

• google-cloud-sdk

• htslib

• intervaltree

• libzlib >=1.2.12,<1.3.0a0

• mock

• numpy 1.16.*

• oauth2client

• openjdk >=8,<9

• parallel

• protobuf

• psutil

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• requests

• scipy

• six

• tensorflow-estimator 2.0.*

• tensorflow-gpu 2.0.*

• unzip

• zlib >=1.2.12,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install deepvariant

and update with:

conda update deepvariant

or use the docker container:

docker pull quay.io/biocontainers/deepvariant:<tag>

(see deepvariant/tags for valid values for <tag>)

Download stats

Link to this page

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