recipe deltapd

DeltaPD is a tool used to determine outliers in a gene tree when compared against a reference tree.

Homepage:

https://github.com/Ecogenomics/DeltaPD

License:

AGPL / AGPL-3.0-only

Recipe:

/deltapd/meta.yaml

Links:

doi: 10.5281/zenodo.4107213

package deltapd

(downloads) docker_deltapd

versions:

0.1.5-4,  0.1.5-3,  0.1.5-2,  0.1.5-1,  0.1.5-0

depends dendropy:

depends ete3:

depends jinja2:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends matplotlib-base:

depends numpy:

>=1.21.6,<2.0a0

depends phylodm:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends seaborn:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install deltapd

and update with::

   mamba update deltapd

To create a new environment, run:

mamba create --name myenvname deltapd

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/deltapd:<tag>

(see `deltapd/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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