recipe demuxem

DemuxEM is the demultiplexing module of Pegasus, which works on cell-hashing and nucleus-hashing genomics data.

Homepage:

https://github.com/lilab-bcb/demuxEM

Documentation:

https://demuxEM.readthedocs.io

License:

BSD / BSD-3-Clause

Recipe:

/demuxem/meta.yaml

Links:

doi: 10.1038/s41467-019-10756-2

package demuxem

(downloads) docker_demuxem

versions:

0.1.7.post1-0,  0.1.7-1,  0.1.7-0,  0.1.6-0,  0.1.5.post1-0

depends docopt:

depends numpy:

depends pandas:

depends pegasusio:

>=0.2.12

depends python:

>=3.8

depends scikit-learn:

depends scipy:

depends seaborn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install demuxem

and update with::

   mamba update demuxem

To create a new environment, run:

mamba create --name myenvname demuxem

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/demuxem:<tag>

(see `demuxem/tags`_ for valid values for ``<tag>``)

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