recipe derip2

Predict ancestral sequence of fungal repeat elements by correcting for RIP-like mutations in multi-sequence DNA alignments.

Homepage:

https://github.com/Adamtaranto/deRIP2

License:

MIT

Recipe:

/derip2/meta.yaml

package derip2

versions:

0.4.0-0

depends biopython:

>1.80

depends click:

depends matplotlib-base:

depends numpy:

depends pandas:

depends python:

>=3.8

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install derip2

and update with::

   mamba update derip2

To create a new environment, run:

mamba create --name myenvname derip2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/derip2:<tag>

(see `derip2/tags`_ for valid values for ``<tag>``)

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