recipe desman

De novo Extraction of Strains from MetAgeNomes

Homepage

https://github.com/chrisquince/DESMAN

License

BSD / BSD

Recipe

/desman/meta.yaml

Links

doi: 10.1186/s13059-017-1309-9

package desman

(downloads) docker_desman

Versions

2.1-2, 2.1-1, 2.1-0

Depends bcbio-gff

Depends biopython

Depends cython

>=0.19.1

Depends gsl

>=2.4,<2.5.0a0

Depends libgcc-ng

>=7.3.0

Depends numpy

>=1.7.1

Depends pandas

>=0.11.0

Depends pysam

Depends python

>=3.6,<3.7.0a0

Depends r-getopt

Depends r-ggplot2

>=2.2.2

Depends r-labeling

Depends r-reshape

>=0.8.7

Depends scikit-learn

Depends scipy

>=0.12.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install desman

and update with:

conda update desman

or use the docker container:

docker pull quay.io/biocontainers/desman:<tag>

(see desman/tags for valid values for <tag>)