recipe dfast

DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline

Homepage:

https://dfast.nig.ac.jp

Developer docs:

https://github.com/nigyta/dfast_core

License:

GPLv3

Recipe:

/dfast/meta.yaml

Links:

biotools: dfast, doi: 10.1093/bioinformatics/btx713

package dfast

Versions:

1.2.17-0,  1.2.16-0,  1.2.15-1,  1.2.15-0,  1.2.14-0,  1.2.13-1,  1.2.13-0,  1.2.12-0,  1.2.11-0, 

1.2.17-0,  1.2.16-0,  1.2.15-1,  1.2.15-0,  1.2.14-0,  1.2.13-1,  1.2.13-0,  1.2.12-0,  1.2.11-0,  1.2.10-0,  1.2.7-0,  1.2.6-1,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.3-2,  1.2.3-1,  1.2.3-0

Depends:

• aragorn

• barrnap

• biopython

• blast >=2.6.0

• ghostx

• hmmer >=3.1b2

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.11,<1.3.0a0

• metagene_annotator >=1.0

• openjdk

• python >=3.6

• zlib >=1.2.11,<1.3.0a0

Required By:

• zga

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install dfast

and update with:

conda update dfast

or use the docker container:

docker pull quay.io/biocontainers/dfast:<tag>

(see dfast/tags for valid values for <tag>)

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