recipe dfast

DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline

Homepage

https://dfast.nig.ac.jp

Developer docs

https://github.com/nigyta/dfast_core

License

GPLv3

Recipe

/dfast/meta.yaml

Links

biotools: dfast, doi: 10.1093/bioinformatics/btx713

package dfast

Versions

1.2.10-0,  1.2.7-0,  1.2.6-1,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.3-2,  1.2.3-1,  1.2.3-0

Depends

• aragorn

• barrnap

• biopython

• blast >=2.6.0

• ghostx

• hmmer >=3.1b2

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• metagene_annotator >=1.0

• openjdk

• python >=3.6

• zlib >=1.2.11,<1.3.0a0

Required By

• zga

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install dfast

and update with:

conda update dfast

or use the docker container:

docker pull quay.io/biocontainers/dfast:<tag>

(see dfast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dfast/README.html)