DIA-Umpire is an open source Java program for computational analysis of data independent acquisition (DIA) mass spectrometry-based proteomics data. It enables untargeted peptide and protein identification and quantitation using DIA data, and also incorporates targeted extraction to reduce the number of cases of missing quantitation.
|License||Apache License, Version 2.0|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install dia_umpire
and update with:
conda update dia_umpire
DIA-Umpire is a Java program.
A Docker container is available at https://quay.io/repository/biocontainers/dia_umpire.