recipe digest

Fast, multi-use k-mer sub-sampling library

Homepage:

https://github.com/VeryAmazed/digest

License:

MIT

Recipe:

/digest/meta.yaml

A C++ library that supports various sub-sampling schemes for k-mers in DNA sequences. Includes Python bindings that allow users to run functions from the C++ library in Python.

package digest

versions:

0.2.0-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends pybind11:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install digest

and update with::

   mamba update digest

To create a new environment, run:

mamba create --name myenvname digest

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/digest:<tag>

(see `digest/tags`_ for valid values for ``<tag>``)

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