recipe dipper

DIPPER: An ultrafast tool for phylogenetic tree reconstruction.

Homepage:

https://github.com/TurakhiaLab/DIPPER

Documentation:

https://turakhia.ucsd.edu/DIPPER

License:

MIT / MIT

Recipe:

/dipper/meta.yaml

DIPPER (DIstance-based Phylogenetic PlacER) is a tool designed for ultrafast and ultralarge phylogenetic tree reconstruction on GPUs. It is capable of reconstructing a phylogenetic tree with 10 million taxa, with a minimal memory footprint.

package dipper

(downloads) docker_dipper

versions:

0.1.1-0

depends boost-cpp:

depends libboost:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends tbb:

2019.9.*

depends tbb:

>=2019.9

depends tbb-devel:

2019.9.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dipper

and update with::

   mamba update dipper

To create a new environment, run:

mamba create --name myenvname dipper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dipper:<tag>

(see `dipper/tags`_ for valid values for ``<tag>``)

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