recipe dreamtools

Scoring functions for the DREAM / SAGE challenges

Homepage:

https://github.com/dreamtools/dreamtools

License:

BSD License

Recipe:

/dreamtools/meta.yaml

package dreamtools

versions:

1.3.0-0,  1.2.5-0

depends biokit:

depends bioservices:

>=1.4.5

depends colormap:

depends cython:

depends easydev:

>=0.9.14

depends fitter:

depends numexpr:

depends pandas:

depends python:

2.7*

depends scikit-learn:

depends scipy:

depends synapseclient:

depends tabulate:

depends xlrd:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dreamtools

and update with::

   mamba update dreamtools

To create a new environment, run:

mamba create --name myenvname dreamtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dreamtools:<tag>

(see `dreamtools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dreamtools/README.html)