recipe drep

De-replication of microbial genomes assembled from multiple samples

Homepage

https://github.com/MrOlm/drep

License

MIT / MIT

Recipe

/drep/meta.yaml

package drep

Versions

2.6.2-0,  2.6.1-0,  2.6.0-0,  2.5.4-0,  2.5.3-0,  2.5.2-0,  2.5.1-0,  2.5.0-0,  2.4.2-0, 

2.6.2-0,  2.6.1-0,  2.6.0-0,  2.5.4-0,  2.5.3-0,  2.5.2-0,  2.5.1-0,  2.5.0-0,  2.4.2-0,  2.4.1-0,  2.4.0-1,  2.4.0-0,  2.3.2-1,  2.3.2-0,  2.2.3-1,  2.2.3-0,  2.0.5-2,  2.0.5-0

Depends

• biopython

• centrifuge

• checkm-genome

• mash

• matplotlib-base

• mummer

• numpy

• pandas

• prodigal

• python >3

• scikit-learn

• seaborn

Required By

• instrain

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install drep

and update with:

conda update drep

or use the docker container:

docker pull quay.io/biocontainers/drep:<tag>

(see drep/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/drep/README.html)