recipe drop

Detection of RNA Outlier Pipeline

Homepage:

https://github.com/gagneurlab/drop

Documentation:

https://gagneurlab-drop.readthedocs.io/en/latest/

License:

OTHER / MIT

Recipe:

/drop/meta.yaml

Links:

https: :https:`//doi.org/10.1038/s41596-020-00462-5`

package drop

Versions:

1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.1.4-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0, 

1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.1.4-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.5-0,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.9.2-0,  0.9.1-0,  0.9.0-0

Depends:

• bc

• bcftools >=1.9

• bioconductor-deseq2

• bioconductor-fraser >=1.10.0

• bioconductor-genomicscores

• bioconductor-outrider >=1.6.1

• bioconductor-variantannotation

• click >=7.0

• click-log

• gatk4 >=4.0.4

• graphviz

• htslib

• pandas

• pandoc

• python >=3.6

• python-dateutil

• r-base >=4.0.0

• r-cowplot

• r-data.table

• r-devtools

• r-dplyr

• r-ggplot2

• r-ggthemes

• r-knitr

• r-magrittr

• r-rmarkdown

• r-tidyr

• r-tmae >=1.0.4

• samtools >=1.9

• snakemake-minimal >=5.5.2

• star >=2.7

• wbuild >=1.8

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install drop

and update with:

conda update drop

or use the docker container:

docker pull quay.io/biocontainers/drop:<tag>

(see drop/tags for valid values for <tag>)

Download stats

Link to this page

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